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Apheris logo
Apheris

Governed, private, secure data access for ML and analytics

Forward-Deployed ML Engineer

Machine Learning EngineerMachine Learning EngineerFull TimeRemoteJuniorTeam 11-50Since 2019H1B No SponsorCompany SiteLinkedIn

Location

Germany

Posted

86 days ago

Salary

0

Seniority

Junior

Postgraduate Degree1 yr expExperience acceptedEnglish

Job Description

Forward-Deployed ML Engineer

Apheris

• Build and implement ML applications in structural biology, particularly around fine-tuning and extending foundational models like OpenFold, Boltz-2 and ESMFold. • Design and implement model extensions for specific tasks such as protein complex and binding affinity prediction, including data distillation, benchmarking, and evaluation pipelines. • Work with our customers and academic partners to define data preprocessing, selection, and benchmarking strategies for novel training tasks involving protein structures, complexes, and multimodal biological data. • Carry out case-studies associated with the above, providing scientific and technical expertise to our customers. • Be involved in the full project pipeline, from scoping through to results delivery and dissemination. • Design, build, and maintain scalable machine learning models and the pipelines needed for training, inference, and deployment in production. • Collaborate cross-functionally to ensure models address real-world drug discovery needs. • Contribute to publications or open-source contributions where relevant.

Job Requirements

  • Deep experience building and training contemporary models in production, at scale (e.g. AlphaFold, OpenFold, Boltz)
  • Experience applying ML to real-world protein structure or drug discovery problems
  • Comfortable working in a fast-paced startup environment and enjoy on customer-driven projects
  • Understand the technical challenges of structural biology and can design scalable data preprocessing, training, and evaluation workflows
  • Nice to have: Experience in federated learning, privacy-preserving ML, or privacy-preserving model training
  • You’ve published in ML or biology journals/conferences (e.g., NeurIPS, ICML, Nature Methods, Bioinformatics)

Benefits

  • Industry-competitive compensation, incl. early-stage virtual share options
  • Remote-first working – work where you work best, whether from home or a co-working space near you
  • Great suite of benefits, including a wellbeing budget, mental health benefits, a work-from-home budget, a co-working stipend and a learning and development budget
  • Regular team lunches and social events
  • Generous holiday allowance
  • Quarterly All Hands meet-up at our Berlin HQ or a different European location
  • A fun, diverse team of mission-driven individuals with a drive to see AI and ML used for good
  • Plenty of room to grow personally and professionally and shape your own role

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