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Science at the Speed of Technology.
Bioinformatics Engineer
Location
United States
Posted
113 days ago
Salary
$125K - $150K / year
Seniority
Senior
Job Description
Bioinformatics Engineer
Axle Informatics
• Evaluate existing bioinformatics pipelines for performance, accuracy, and maintainability, identifying opportunities for optimization and enhancement • Develop, extend, and maintain Nextflow workflows for bulk RNA-seq, single-cell RNA-seq, DNA variant calling, methylation analysis, and emerging assay types • Architect scalable solutions capable of processing thousands of samples efficiently on Google Cloud Platform • Optimize data input/output operations across pipeline modules to minimize bottlenecks and reduce computational costs • Prepare and structure analysis outputs for visualization platforms and downstream statistical or machine learning applications • Implement best practices for workflow versioning, containerization, testing, and documentation • Collaborate with computational biologists, data scientists, and software engineers to integrate pipelines into broader analytical ecosystems • Stay current with advances in sequencing technologies and analytical methods, evaluating and incorporating new tools as appropriate
Job Requirements
- Master's degree in bioinformatics, computational biology, computer science, or a related field (or equivalent experience)
- 3+ years of hands-on experience developing and maintaining bioinformatics pipelines in a production environment
- Proficiency with Nextflow (DSL2) and familiarity with workflow management concepts
- Strong experience with RNA-seq analysis (both bulk and single-cell) and DNA sequencing workflows (variant calling, methylation)
- Working knowledge of Google Cloud Platform services (Compute Engine, Cloud Storage, Batch, Life Sciences API, or similar)
- Proficiency in Python and/or R for scripting, data manipulation, and tool development
- Experience with containerization technologies (Docker, Singularity)
- Familiarity with version control systems (Git) and CI/CD practices
- Strong understanding of genomic file formats (FASTQ, BAM, VCF, BED) and common bioinformatics tools (STAR, Salmon, BWA, GATK, Bismark, Cell Ranger, Seurat, Scanpy)
Benefits
- 100% Medical, Dental & Vision Coverage for Employees
- Paid Time Off and Paid Holidays
- 401K match up to 5%
- Educational Benefits for Career Growth
- Employee Referral Bonus
- Flexible Spending Accounts: Healthcare (FSA), Parking Reimbursement Account (PRK), Dependent Care Assistant Program (DCAP), Transportation Reimbursement Account (TRN)
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